Foudy15,
Since you are fishing so shallow, are you also seeing gaps in the bottom on the 50Khz side? If you are then it is more likely to be a water flow issue. If you aren't I would suspect the sounder is "maybe" picking up engine/alternator noise. A way to tell is to get the vessel moving past trolling speed so the noise appears then kill the engine. If the noise immediately goes away it engine related, if the noise is still there but slowly weakens as the vessel slows down it would point to a water flow issue.
Hope this helps.
Snips